• 8:30 Meet up at the hotel lobby
• 9:00 Registration opens
• 10:00 Introduction and biomedical semantic resources

10:00-10:10	Introduction to the BioHackathon 2015
	Toshiaki Katayama Database Center for Life Science, Japan
10:10-10:25	Research at the Atomic Bomb Disease Institute, Nagasaki University
	Hiroyuki Mishima Nagasaki University, Japan
10:25-10:40	UniProt SPARQL in production
	Jerven Bolleman Swiss Institute of Bioinformatics, Switzerland
10:40-10:55	PubChemRDF examples, potential applications, and future directions
	Evan Bolton National Center for Biotechnology Information, USA

• 10:55 Coffee break

11:10-11:25	Efforts in the semantic standardization of orthology content
	Jesualdo Tomás Fernández-Breis University of Murcia, Spain
	Applying RDF/SPARQL to ortholog databases
	Hirokazu Chiba National Institute for Basic Biology, Japan
11:25-11:40	GlycoRDF ontology
	Thomas Luetteke Justus-Liebig University Giessen, Germany
11:40-11:55	MeSH RDF 2015
	Gang Fu National Center for Biotechnology Information, USA

• 11:55 Group photo
• 12:00 Lunch
• 13:00 Data integration and biomedical applications

13:00-13:15	Importance of phenotype data sharing: a proposal from a clinician-researcher on undiagnosed diseases
	Kenjiro Kosaki Center for Medical Genetics, Keio University School of Medicine, Japan
13:15-13:30	Phenotype Ontologies and their role in understanding rare disorders
	Tudor Groza Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Australia
13:30-13:45	Introduction of DisGeNET, a discovery platform for the dynamical exploration of human diseases and their genes
	Núria Queralt Rosinach Institut Hospital del Mar d'Investigacions Mèdiques, Spain
13:45-14:00	Network Analysis and Linking for Bio2RDF
	Michel Dumontier Stanford University School of Medicine, USA
14:00-14:15	Identifiers.org updates
	Nick Juty European Bioinformatics Institute, UK
14:15-14:30	YacMa: a semantic web platform for biological knowledge integration
	Erick Antezana Affiliation: Norwegian University of Science and Technology, Norway & Bayer CropScience, Belgium

• 14:30 Coffee break
• 14:45 Software development in bioinformatics

14:45-15:00	The Human Genome Variation Map Pilot Project
	Benedict Paten University of California, Santa Cruz, USA
15:00-15:15	Bionode - Modular and universal bioinformatics
	Bruno Vieira Queen Mary University of London, UK
15:15-15:35	Writing FOSS software for big biology
	Pjotr Prins Director of Genenetwork.org, The Netherlands
	BioInformatics and Semantic Web, what do they need a bioinformatician and a biomedical researcher?
	Raoul Bonnal Isituto Nazionale Genetica Molecolare “Romeo ed Enrica Invernizzi”, Italy
15:35-15:50	Semantics for experimental protocols
	Alexander García Universidad Politécnica de Madrid, Spain
15:50-16:00	Text Mining Tools for Assisting Literature Curation
	Chih-Hsuan Wei National Institute of Health, USA
16:00-16:10	Europe PubMed Central and Linked Data
	Jee-Hyub Kim European Bioinformatics Institute, UK
16:10-16:20	LODQA: natural language interface to SPARQL endpoints
	Jin-Dong Kim Database Center for Life Science, Japan

• 16:20 Coffee break
• 16:40 Lightning talks (5min each)

Kieron Taylor RDF - a composable Ensembl Tazro Ohta Semantic Wet Lab: Publishing Protocols and Workflow Robert Hoehndorf Aber-OWL update Naohisa Goto BioRuby Shuichi Kawashima NBDC RDF portal Yasunori Yamamoto D2RQ mapper that gives RDF powers to RDB Bono Hidemasa AOE: All of publicly available gene expression data Takeshi Kawashima The Necessity of tools for finding out associations between phylogenetic and geologic data in modern genomic-scale phylogenetics Arto Bendiken Dydra - cloud hosting for RDF & SPARQL Peter Amstutz A brief introduction to Arvados, Common Workflow Language, and Schema Salad Colin Hercus NovoAlign, novoSort, novoLR and novoWorx Mark Thompson Open, reusable knowledge graph annotations

• 18:00 Bus to the hackathon venue
• 19:00 Reception party

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